PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027491-PA
Common NameOsI_28159
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 463aa    MW: 49888.8 Da    PI: 6.9014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027491-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.64.5e-1766121359
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWr  GqK v+g  + + YY C++a+C + k v rsa d+++ +++ +g+Hnh+
  BGIOSGA027491-PA  66 DGYNWRMCGQKLVQGGCHQKFYYECSQANCGAEKSVTRSA-DGQIKKTVCKGSHNHP 121
                       9***************************************.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.06E-1762122IPR003657WRKY domain
SMARTSM007741.2E-1064122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-1564122IPR003657WRKY domain
PfamPF031062.3E-1566121IPR003657WRKY domain
PROSITE profilePS5081114.30966123IPR003657WRKY domain
SuperFamilySSF495993.6E-16259390IPR008974TRAF-like
PROSITE profilePS501449.013260387IPR002083MATH/TRAF domain
Gene3DG3DSA:2.60.210.106.3E-4261389IPR008974TRAF-like
CDDcd001212.91E-10263388No hitNo description
CDDcd147367.21E-24400458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MENNQSGQAQ DGMADQRFRS WLTEQLNMQQ QNAGCSSNPA PAVMQMPALP SHTDYGGIYP  60
NPTEYDGYNW RMCGQKLVQG GCHQKFYYEC SQANCGAEKS VTRSADGQIK KTVCKGSHNH  120
PRSSERVFGD GSATLDAILV GEILQAAGVI RPSVAMPRNE EEDGLQSGSS DSGDDDASEA  180
RAAGDDNAIR HVPAAAAQDT TAHNTIDVDV LGNSSQQRKN YHRSDGVVFD SLTTTRQLPV  240
ECSKSIHGGF FSSNITDAAR AVHMFKINGY SATRAMARTD SIPSRRLPVG GYHWEVHYTA  300
SLVADSNYWV ALKLVLLAAP RRADVKAALR CRLINGNASS PVVADGHVSH AFKRAGESSA  360
WVLLLRRSAL EASAAIVDDA FTVECTITIM CEEKLSNGAT VETAATTLAL AEQHGCPRLR  420
ARCVEVVAAN LDAVMATEGY KHLMASSPLV MNDLLRAVRG RKS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154752000.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054160.0AP005416.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23.
GenBankAP0054990.0AP005499.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0412D08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2YS610.0A2YS61_ORYSI; Uncharacterized protein
STRINGOS08T0198100-001e-163(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140321024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.14e-16WRKY DNA-binding protein 58