PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027652-PA
Common NameOsI_27813
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 224aa    MW: 25318.5 Da    PI: 9.9611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027652-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-101445132
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                      rg W++eEde+l+++++ +G g+W+ ++++ g
  BGIOSGA027652-PA 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAG 45
                      788**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-13646IPR009057Homeodomain-like
PROSITE profilePS5129410.088967IPR017930Myb domain
SuperFamilySSF466892.02E-81046IPR009057Homeodomain-like
SMARTSM007173.2E-51362IPR001005SANT/Myb domain
PfamPF002491.2E-71445IPR001005SANT/Myb domain
CDDcd001671.53E-61757No hitNo description
PfamPF078514.1E-4062194IPR012926TMPIT-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGKFVGG QLTKYFYSTP  60
KYLTWEIKGQ PDCSRKQRGV ELFLCWAIMQ GFAMMLQNRY QRQRLYTRIA LGKARRMDVV  120
WGETAGVEGQ LLLLCPVLFL LQGFEGYVGF LLLRTAHTGI VPEWQVVVCG VLLIAMAIGN  180
FANTVDTLMA KSRFKAKKRS RGKRDPDTCN SPTGLSPTNS TARA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201AKKRSRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.555280.0flower| panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428660.0AK242866.1 Oryza sativa Japonica Group cDNA, clone: J090075I22, full insert sequence.
GenBankAK2888510.0AK288851.1 Oryza sativa Japonica Group cDNA, clone: J090075I22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648130.11e-115transmembrane protein 120 homolog isoform X1
TrEMBLB8BAQ41e-167B8BAQ4_ORYSI; Uncharacterized protein
STRINGOS08T0152800-001e-114(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-27myb domain protein 103