PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027780-PA
Common NameOsI_27539
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 303aa    MW: 32152.8 Da    PI: 6.9774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027780-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09169209954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  BGIOSGA027780-PA 169 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 209
                       699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15165221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-15166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13166219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-7170209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-6183214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTHNSSSSSS WDLDMSLGSH HHPLLFDQPP PPPPPPPPPP LPFHLHHHPL DPSPSSSLFP  60
PPPHHHHHAH HLHHPLDLDQ RRGHHDYGGG DQGGDEELRL QQEAAAGGGG GGQDGGGGGD  120
QDADEELGAM KEMMYRIAAM QPVDIDPATI KKPRRRNVRI SDDPQSVAAR HRRERISERI  180
RILQRLVPGG TKMDTASMLD EAIRYIKFLK RQVQELQHQP GPPPPPYPAG AAPAAGPSTS  240
AVGPPGRPFL PLGGGGPMID WVGLTRPVDI HGPTSSSSSS SMGGALGFGF GGGGGGQSSH  300
GMH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.730470.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977259840.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649611.10.0transcription factor HEC2
TrEMBLA2YQH40.0A2YQH4_ORYSI; Uncharacterized protein
STRINGOMERI08G00980.10.0(Oryza meridionalis)
STRINGONIVA08G00590.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-37bHLH family protein