PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA027987-PA
Common NameOsI_27803
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 325aa    MW: 34584.3 Da    PI: 10.6389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA027987-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-1493137347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  BGIOSGA027987-PA  93 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 137
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.43186142IPR017930Myb domain
SuperFamilySSF466891.0E-1787142IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-1889141IPR006447Myb domain, plants
SMARTSM007173.5E-1190140IPR001005SANT/Myb domain
CDDcd001676.85E-1093138No hitNo description
Gene3DG3DSA:1.10.10.606.8E-1293136IPR009057Homeodomain-like
PfamPF002494.6E-1293137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MRLFGVTISP PPPPAEPDPS DRRDPSPRPA REDAMRKCKS MGNLAAAAAS SAAAGGGGAG  60
DAGGSGDGYL SDGGLLQSSG KRRRAQERKK AVPWTEEEHR TFLAGLEKLG KGDWRGISKN  120
FVTTRTPTQV ASHAQKYFLR QTNPNKKKRR SSLFDMMATD MSPAPNCPVL PPSMGKLHDM  180
VTMTKQLQNS SLEGVSSSST VNLAPQVARD LPPPIPSFKA TNVDSSLSKM NHMDGFLRAP  240
MLFRPIPRIA EGASSSTPAT ASIADLEFQA NLTACSNALF ASPRRKPKKA DPPAEKDLDL  300
TVAPPSQQTR ASISSQNAVG VIQVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.261090.0callus| flower| leaf| panicle| root| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976079740.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420170.0AK242017.1 Oryza sativa Japonica Group cDNA, clone: J075110L24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648291.10.0transcription factor MYBS3-like isoform X1
TrEMBLB8BAP20.0B8BAP2_ORYSI; Uncharacterized protein
STRINGONIVA06G02390.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-37MYB_related family protein