PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028023-PA
Common NameOsI_27893
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 320aa    MW: 33371.3 Da    PI: 6.942
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028023-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07258301243
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  BGIOSGA028023-PA 258 GSWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 301
                       79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.066165218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-5167202IPR009057Homeodomain-like
PROSITE profilePS500905.877167208IPR017877Myb-like domain
SuperFamilySSF466893.51E-7167210IPR009057Homeodomain-like
CDDcd001676.48E-5168210No hitNo description
PfamPF139215.4E-5169209No hitNo description
SuperFamilySSF466898.58E-10256306IPR009057Homeodomain-like
SMARTSM007176.1E-7256308IPR001005SANT/Myb domain
PfamPF002491.1E-6258301IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-6258305IPR009057Homeodomain-like
PROSITE profilePS500906.922258306IPR017877Myb-like domain
CDDcd001672.81E-5264306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEFIDDDWDY QPRARVIHSR SNASANAAGA STSSTQPCRS LPHAAACAAA AVALLAAAYY  60
LLPDYQVLAS VVVWVALSLL LAPFAPSSAT GGDISVGRGD PLPEQEPVEE PVPDPAPTSR  120
RGRRQSSNPT PTPPPPKPSD PIAPPPPRHA AATTAVSDGG EAVEDAGEWT DQEMDILRRQ  180
MVKHPAGEPQ RWEKIAAAFG GRRTPESVIR AAKSGGGAAA AGASFDQFLR KRKPIDPRAE  240
AADAGGGNAG GGGESGDGSW SAGDDRALLN ALKEFPKDTA MRWEKVAAAV PGKTKAACMK  300
RVTELKRDFR SSKAASEAAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233LRKRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.112380.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329836400.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659147.11e-151PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ23e-59MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA2YRF40.0A2YRF4_ORYSI; Uncharacterized protein
STRINGOB08G13810.11e-150(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-41MYB_related family protein