PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028027-PA
Common NameOsI_27903
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 330aa    MW: 34588.1 Da    PI: 7.4843
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028027-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.2e-32162215255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH+rFv+ave LGG+++AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  BGIOSGA028027-PA 162 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDVKDLTLAHVKSHLQMYRT 215
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-16159216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-29160216IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-24162215IPR006447Myb domain, plants
PfamPF002495.3E-7163214IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTGA AAAAHGHGLN ARFFAAAAGA GGHNPAMASS PPSSLQLPLP  60
MPLPLPLPLP MAPAGAGGLQ FYPDAAAAML RPIRGVPLYH HHQQQHAAAA PFVGAAPLPH  120
HPSSGGACYC EPCHVAGAWR RGGCGGGGAR GVLPAKRAPR APRMRWTSTL HARFVHAVEL  180
LGGHDRATPK SVLELMDVKD LTLAHVKSHL QMYRTVKNTE RPAASSDQAD GFENGSAGEI  240
CDENSLDLHG GCRPEAMSAA ATAAAAARHG REDWSGFHES NTGTMQTLKD MQSKSLEILS  300
DMNSCVSETT SSTSELNLEF TLGRPQNRPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1011940.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154749000.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648944.11e-170probable transcription factor KAN2 isoform X2
TrEMBLB8BAX40.0B8BAX4_ORYSI; Uncharacterized protein
STRINGORGLA08G0030700.11e-165(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-38G2-like family protein