PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028043-PA
Common NameOsI_27936
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 143aa    MW: 15722.1 Da    PI: 4.1267
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028043-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26041.53.9e-13216754100
            DUF260  54 redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                         + m+++vy A+ar++dP+ Ga+g ilklqqql++lkae a+++++
  BGIOSGA028043-PA  21 TVISMAAVVYLADARVEDPILGAYGRILKLQQQLDRLKAERARQHHP 67 
                       5789**************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031958.5E-82164IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MERILGFSEA EKQGIRPNGS TVISMAAVVY LADARVEDPI LGAYGRILKL QQQLDRLKAE  60
RARQHHPATS SPAPADDVAL QPEPFHQPPA QPSTPPALAI PDEEEEEDND DDEDEDEEEG  120
QEEGEGHAPA DDDVPCAKRR KHN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.316250.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154749420.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649522.18e-98LOB domain-containing protein 1
TrEMBLA0A0E0I7K81e-97A0A0E0I7K8_ORYNI; Uncharacterized protein
TrEMBLA2YRJ41e-97A2YRJ4_ORYSI; Uncharacterized protein
STRINGONIVA08G03920.12e-98(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16910911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-06LOB domain-containing protein 4