PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028399-PA
Common NameOsI_28664
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 212aa    MW: 24594.6 Da    PI: 6.5185
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028399-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.6e-081511842154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp++e++++L +++gL+ +q+ +WF N+R +
  BGIOSGA028399-PA 151 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 184
                       569*****************************87 PP
2ELK27.56.9e-10105126122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++L+++++E++
  BGIOSGA028399-PA 105 ELKHELKQGYKEKLIDIREEIL 126
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012565.4E-13150IPR005541KNOX2
PfamPF037915.7E-121149IPR005541KNOX2
PfamPF037891.3E-4105126IPR005539ELK domain
SMARTSM011880.004105126IPR005539ELK domain
PROSITE profilePS5121310.039105125IPR005539ELK domain
PROSITE profilePS5007111.742125188IPR001356Homeobox domain
SMARTSM003894.8E-11127192IPR001356Homeobox domain
SuperFamilySSF466893.12E-16127192IPR009057Homeodomain-like
CDDcd000862.14E-11128189No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25132189IPR009057Homeodomain-like
PfamPF059204.6E-18145184IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDKYYEEDWT HYVLLLCSFK EQLQQHVRVH AMEAVMACWE LEQNLQSLTG ASPGEGTGAT  60
MSDGEDDQAD SEANMYDPSL DGADNMGFGL PTESERSLME RVRQELKHEL KQGYKEKLID  120
IREEILRKRR AGKLPGDTTS TLKAWWQSHA KWPYPTEEDK ARLVQETGLQ LKQINNWFIN  180
QRKRNWHSNP SSSTSVKTKR KRYQINLCTS VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-13128192872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181201RKRNWHSNPSSSTSVKTKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.59920.0flower| leaf| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379883080.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoforms 1 and 2 are expressed in roots, stems, shoot meristem, leaf blades, leaf sheaths and flowers. Isoform 3 is expressed in stems, shoot meristem, rachis, leaf blades and leaf sheaths. {ECO:0000269|PubMed:7599652}.
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345870.0CT834587.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN088H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650701.21e-143LOW QUALITY PROTEIN: homeobox protein knotted-1-like 13
SwissprotQ0J6N41e-144KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLB8B9A91e-158B8B9A9_ORYSI; Uncharacterized protein
TrEMBLB9G0511e-158B9G051_ORYSJ; Uncharacterized protein
STRINGOBART08G09500.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-117KNOTTED1-like homeobox gene 3