PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028423-PA
Common NameOsI_28713
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 82aa    MW: 8489.75 Da    PI: 11.0585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028423-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-052446123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC+ Cg+sFs+   L  H  +H
  BGIOSGA028423-PA 24 FKCSVCGRSFSSYQALGGHKTSH 46
                      89**********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-62351No hitNo description
SMARTSM003550.00812446IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-42446IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.782451IPR007087Zinc finger, C2H2
PfamPF139126.3E-132447IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MLALGGHHRV QAPPPLSAPV GAEFKCSVCG RSFSSYQALG GHKTSHRFKL PTPPASPVLA  60
PASSEVQSPL AFSPRNSAAA RI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.79123e-62callus| flower| leaf| panicle| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-137CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649250.12e-52zinc finger protein 1, partial
SwissprotQ424305e-21ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0I9Z03e-50A0A0E0I9Z0_ORYNI; Uncharacterized protein
TrEMBLB8B9I52e-50B8B9I5_ORYSI; Uncharacterized protein
TrEMBLI1QHE85e-50I1QHE8_ORYGL; Uncharacterized protein
TrEMBLQ6UU085e-50Q6UU08_ORYSJ; Putative zinc finger transcription factor
STRINGONIVA08G10560.15e-51(Oryza nivara)
STRINGORGLA08G0084900.18e-51(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.13e-11zinc-finger protein 1