PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA028509-PA

Common Name

OsI_28906

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

G2-like

Protein Properties

Length: 112aa MW: 12275.9 Da PI: 10.4508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA028509-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	44	5e-14	34	63	1	31
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkt 31 kprlrWt +LH+rFv+av+qLGG++ +tP+ BGIOSGA028509-PA 34 KPRLRWTADLHDRFVDAVAQLGGPD-TTPRV 63 79**********************9.78864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-12	31	61	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-9	34	62	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MFPGLIHHHR LLDADVGGGG GGSSAGLVLT ADPKPRLRWT ADLHDRFVDA VAQLGGPDTT 60 PRVSSLTEGI HGVALENRPH SGRYPCLVAS KSEEIWGHWL KRRRPQWVSR TK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.15464	1e-49	callus\| flower\| leaf\| panicle\| seed\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059644	1e-92	AK059644.1 Oryza sativa Japonica Group cDNA clone:001-031-B12, full insert sequence.
GenBank	AK062928	1e-92	AK062928.1 Oryza sativa Japonica Group cDNA clone:001-109-A04, full insert sequence.
GenBank	AK103873	1e-92	AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBank	AP004396	1e-92	AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10.
GenBank	AP004459	1e-92	AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11.
GenBank	AP014964	1e-92	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CT834232	1e-92	CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650961.1	2e-22	protein PHR1-LIKE 3
Swissprot	Q8LAJ7	1e-15	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	B8B9Z6	2e-75	B8B9Z6_ORYSI; Uncharacterized protein
STRING	ONIVA09G02600.1	7e-33	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.2	3e-15	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]