PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA028510-PA

Common Name

OsI_28907

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

G2-like

Protein Properties

Length: 254aa MW: 28110.2 Da PI: 9.0496

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA028510-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.8	3.7e-16	65	96	24	55
G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m+vkgLtl h+kSHLQkYRl BGIOSGA028510-PA 65 DSEATPKTIMRTMGVKGLTLFHLKSHLQKYRL 96 578****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	1.7E-10	58	97	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.9E-15	58	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-6	63	98	IPR009057	Homeodomain-like
Pfam	PF14379	6.2E-21	137	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MPSGSAATGP ARREGGEHAR PWMGERVVFA GKVERMLLVV DQQELVHFLV ALLLCKSALF 60 RLKVDSEATP KTIMRTMGVK GLTLFHLKSH LQKYRLGKQS GKEMAEQSKD ASYILGAQSG 120 TNLSPTVPTP DLKESQELKE ALRAQMEVQR KLHEQVEVQR HVQIRMEAYQ NYIDTLLEKA 180 CNIVSEQLNG FSISDHDLTS AGVMLSSSDT LSPSIFHQLS VSSISLHSPG GKSSPFAADA 240 DLFFQKAPEK RKSY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.15464	0.0	callus\| flower\| leaf\| panicle\| seed\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103873	0.0	AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBank	CT834232	0.0	CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650961.1	1e-133	protein PHR1-LIKE 3
Swissprot	Q8LAJ7	5e-41	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	B8B9Z7	0.0	B8B9Z7_ORYSI; Uncharacterized protein
STRING	ONIVA09G02600.1	1e-152	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-43	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]