PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA028546-PA

Common Name

OsI_28985

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 795aa MW: 91055.3 Da PI: 7.2431

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA028546-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.2	3.1e-14	128	266	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCs..kegkreeekkk............................................. 47 Yn+YA+++GF++r+++s++s+ + +k+ +C+ ++g +++++ k BGIOSGA028546-PA 128 VYNAYAYKLGFRTRIASSRNSQASSGEKKASKKCKvsENGDNHDDEPKlirrefecvharkpenttkdsaggssfiseenkenppllegnkkk 220 7*****************965555555555554004444444444478888888888888888888********************* PP FAR1 48 ....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 e +r++ ++ + +Cka++ v ++ d+kw+v+ ++ +H+H+++ BGIOSGA028546-PA 221 apllVEGKRKRPKVAKYDCKAHMAVGLR-DNKWRVIAFQPKHTHPMV 266 98999999999***********.9************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-11	128	266	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-33	388	480	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.115	671	707	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-6	671	705	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-5	682	709	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MAHLIHQVER DFPPSSSSAN RGTTPMHNAT NLLMKQDKVL QIDLQAPSSS GGFFDVLLSK 60 SSGHETDLVV DVESVDNIDV AAVTIEIDEQ LDEDASENNE KEKDVVCSPP IVPYIGMEFD 120 IVEEARNVYN AYAYKLGFRT RIASSRNSQA SSGEKKASKK CKVSENGDNH DDEPKLIRRE 180 FECVHARKPE NTTKDSAGGS SFISEENKEN PPLLEGNKKK APLLVEGKRK RPKVAKYDCK 240 AHMAVGLRDN KWRVIAFQPK HTHPMVKRLG RRRYYRSHRH ISNEDYEFLK TLHDRNIATS 300 QILALLGDLH GGVRNLTFTA KDVLNLRTKL RQQVSLKDVA MTIDYFQKTQ ADNPSFFYAA 360 RYDEDNVLKA LFWVDGRTRK LYQSYKDCVF FDTTFMTNRY NMPFAPIVGI NNHLQTILLG 420 CALICDETTE TFIWIFETWM QAMNGQKPGS VMTDRDKAMR AAIKKVFPGT IHRCCLWHVT 480 TKADQQLLPV YTSKKGFREA LYRCIYDSET IDQFLLDWQK MVDEYDLHGN QTLNNLWETK 540 EMWAPVYFNT SFFPFTGTTG RSEGLNGLFK LFVHPQDSVW IFVKQYEHII ETRLDREDRE 600 GYKVETTEPR MYSRSLIEKQ ASQFYTTSVF ADKFQYEIYE ATGLDAEKTQ EVPDIIYNVM 660 PSDIERTGKK YRVTVDAAHS TYSCSCHKFE RDGLLCSHIL RVMAVLNIHE IPSKYLLKRW 720 SEQATLQIRD EYNGPAPSIG VPATSKLRFN ALCRAMTSLA SDACVNEEKY LIVSAGIQNL 780 QAMVATPHTV ETQHQ

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MAHLIHQVER DFPPSSSSAN RGTTPMHNAT NLLMKQDKVL QIDLQAPSSS GGFFDVLLSK  60
SSGHETDLVV DVESVDNIDV AAVTIEIDEQ LDEDASENNE KEKDVVCSPP IVPYIGMEFD  120
IVEEARNVYN AYAYKLGFRT RIASSRNSQA SSGEKKASKK CKVSENGDNH DDEPKLIRRE  180
FECVHARKPE NTTKDSAGGS SFISEENKEN PPLLEGNKKK APLLVEGKRK RPKVAKYDCK  240
AHMAVGLRDN KWRVIAFQPK HTHPMVKRLG RRRYYRSHRH ISNEDYEFLK TLHDRNIATS  300
QILALLGDLH GGVRNLTFTA KDVLNLRTKL RQQVSLKDVA MTIDYFQKTQ ADNPSFFYAA  360
RYDEDNVLKA LFWVDGRTRK LYQSYKDCVF FDTTFMTNRY NMPFAPIVGI NNHLQTILLG  420
CALICDETTE TFIWIFETWM QAMNGQKPGS VMTDRDKAMR AAIKKVFPGT IHRCCLWHVT  480
TKADQQLLPV YTSKKGFREA LYRCIYDSET IDQFLLDWQK MVDEYDLHGN QTLNNLWETK  540
EMWAPVYFNT SFFPFTGTTG RSEGLNGLFK LFVHPQDSVW IFVKQYEHII ETRLDREDRE  600
GYKVETTEPR MYSRSLIEKQ ASQFYTTSVF ADKFQYEIYE ATGLDAEKTQ EVPDIIYNVM  660
PSDIERTGKK YRVTVDAAHS TYSCSCHKFE RDGLLCSHIL RVMAVLNIHE IPSKYLLKRW  720
SEQATLQIRD EYNGPAPSIG VPATSKLRFN ALCRAMTSLA SDACVNEEKY LIVSAGIQNL  780
QAMVATPHTV ETQHQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003913	0.0	AP003913.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1484_G09.
GenBank	AP005817	0.0	AP005817.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1118_F01.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467137.2	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B8BA79	0.0	B8BA79_ORYSI; Uncharacterized protein
STRING	Sb03g029595.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-91	FAR1-related sequence 5