PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028650-PA
Common NameOsI_29203
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 279aa    MW: 29395.8 Da    PI: 8.4605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028650-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-20103152255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa  +++a+ +l+g
  BGIOSGA028650-PA 103 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALTYDQAAYRLRG 152
                       59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-29102162No hitNo description
PROSITE profilePS5103223.024103160IPR001471AP2/ERF domain
SMARTSM003805.0E-34103166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-32103162IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22103162IPR016177DNA-binding domain
PRINTSPR003679.9E-11104115IPR001471AP2/ERF domain
PfamPF008475.5E-14104152IPR001471AP2/ERF domain
PRINTSPR003679.9E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAAIEGNLM RALGEAPSPQ MQKIAPPPFH PGLPPAPANF SSAGVHGFHY MGPAQLSPAQ  60
IQRVQAQLHM QRQAQSGLGP RAQPMKPASA AAPAAAAARA QKLYRGVRQR HWGKWVAEIR  120
LPRNRTRLWL GTFDTAEEAA LTYDQAAYRL RGDAARLNFP DNAASRGPLD AAVDAKLQAI  180
CDTIAASKNA SSRSRGGAGR AMPINAPLVA AASSSSGSDH SGGGDDGGSE TSSSSAAASP  240
LAMEQLDFSE VPWDEAEGFA LTKYPSYEID WDSLLNNNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19102160463ATERF1
3gcc_A2e-19102160463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.55990.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2844318030.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8316460.0CT831646.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650910.11e-161ethylene-responsive transcription factor RAP2-4
TrEMBLA2YV510.0A2YV51_ORYSI; Uncharacterized protein
STRINGONIVA08G15160.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-50related to AP2 4