PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028717-PA
Common NameOsI_29331
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 266aa    MW: 27798.4 Da    PI: 5.652
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028717-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.62.2e-34872073124
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaks 93 
                        ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai  lt  +s +a ++            ++++++a+++
  BGIOSGA028717-PA  87 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRLTLPDSADAAAApaF---AAAPPPADQHSSAMAA 176
                       689**********************************************************9955555233221...1111112222233444 PP

               TCP  94 aakskksqksaasalnlakesrakararare 124
                       aa s  ++k +as ++  + s+a+ar r ++
  BGIOSGA028717-PA 177 AAASAAKEKGEASSSSTTNASSARARNRDHD 207
                       4455555555555566666777777776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR015117.7E-54757IPR020467Potassium channel, voltage dependent, Kv1.4
PRINTSPR015117.7E-56069IPR020467Potassium channel, voltage dependent, Kv1.4
PROSITE profilePS5136933.08788146IPR017887Transcription factor TCP subgroup
PfamPF036342.3E-3288202IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSAPSSSSSP STLDEYDARF FFPGADAYTA GHRQDEETLE AVLRQPVTTT AAVAAAAAAV  60
EGGGGGGGGG AGGSPAAAAA ATRRRPFRTD RHSKIRTAQG VRDRRMRLSV GVARDFFALQ  120
DKLGFDKASR TVEWLLTQSK HAINRLTLPD SADAAAAPAF AAAPPPADQH SSAMAAAAAS  180
AAKEKGEASS SSTTNASSAR ARNRDHDGSS PVAPMDERGR RGVELDWTAA AAASTEQPMD  240
GLEYYFQYYN HLEEIMSCDP TTTTDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-123transcription factor TB1
TrEMBLA2YVH30.0A2YVH3_ORYSI; Uncharacterized protein
STRINGONIVA08G16720.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-24TCP family protein