PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028765-PA
Common NameOsI_29427
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 84aa    MW: 9239.76 Da    PI: 11.1958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028765-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000523452220
                      EETTTTEEESSHHHHHHHH CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHi 20
                      +Cp+C+ +F+++ ++++H 
  BGIOSGA028765-PA 34 ECPKCHGVFNTRREFVNHK 52
                      6*****************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASQVPSKSV RTGYTQPSPG AMAGGDAPQH KPIECPKCHG VFNTRREFVN HKCSNTRLFM  60
LAQAKKAAKK AVLKQIRNKG NKFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126163e-89CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BB897e-56B8BB89_ORYSI; Uncharacterized protein