PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028855-PA
Common NameOsI_29608
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 349aa    MW: 36913.7 Da    PI: 7.1029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028855-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-132167354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r+h+e+Er+RR+riN  +++Lr+l+P+a      +++Ka+ L ++v+++++L
  BGIOSGA028855-PA 21 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRHVREL 67
                      58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.9291867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-122168No hitNo description
Gene3DG3DSA:4.10.280.108.9E-142168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-112473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-4123189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVTDGECSAA AARKGGSPAV RSHSEAERKR RQRINAHLAT LRTLVPSASR MDKAALLGEV  60
VRHVRELRCR ADDATEGADV VVPGEGDEVG VEDEDDDEGE RDEGCYVVGG GDRRWRRRVR  120
AWVCCADRPG LMSDLGRAVR SVSARPVRAE VATVGGRTRS VLELDVVVAS DAADNDRAVA  180
LSALRAALRT VLLNREELLA AAAAAATDGY KRPRFSPSYA ARHLLDTAAA AAAPEAAPAQ  240
PSMPTVPTTL PPIPSIPAVP KLTVPPMPSV PIPKVTIPPT AAGTIPSLPI PAIPTTIPTI  300
PTVPVTPATN ALNPNHYSIH SHHNPDDDPY HSRVPDATNP IHVLTSQSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.739880.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039170.0AP003917.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1666_A04.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649548.11e-149transcription factor AIG1
TrEMBLB8BBS10.0B8BBS1_ORYSI; Uncharacterized protein
STRINGONIVA08G20180.11e-149(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-13bHLH family protein