PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028876-PA
Common NameOsI_29662
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 720aa    MW: 78922.3 Da    PI: 8.8429
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028876-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015376398123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+k+F  +s +  Hi +H
  BGIOSGA028876-PA 376 FECPVCNKTFEEQSRYFGHIGSH 398
                       89*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.693201274IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.96E-6205256IPR016177DNA-binding domain
PfamPF014297.5E-5211254IPR001739Methyl-CpG DNA binding
SMARTSM003550.41327350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280329350IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681376403IPR007087Zinc finger, C2H2
SMARTSM003550.018376398IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280378398IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MASARLVVHK RGRQQAHGRR HMSVERDGQL SVRSGRARRR LRPRRGPRSS CPDRAVFNES  60
AGSRKQTFSR VRFVPAAAAA AAAASASAAA AAKLPRGNDK EDSFIAYHLR RLFAPDDPSL  120
IENPSFPQTQ TLARSPSPDP DQLTTNSRGV SVDLVSLSRL ADPYDAELGK RTARMTTEEE  180
LMGFISSLAG QWVNQRMRRK LVDASFFGDH LPSGWRLQLG IERKDRKAWV NCFSYVSPKG  240
QSFATCQEVS AYLMSLLGYP EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTSMDSQS  300
NLPVASATFY SHSRDQDETV ADDINSYECQ QCNLTFHGQS AYAHHLITFH KVSSKRRKSN  360
KVSKFGEPVI GKDGKFECPV CNKTFEEQSR YFGHIGSHAK YQGLTPEAFL QTFSGKVGNN  420
SFAGLSSSLQ VLVGSPQLNE KTTACEARSQ HHDCSTKHGG NSTRGIDLFN SNHPANFNGH  480
NQSWCRSDEI PPTTEAQSTW TYRNNEMNCA DRTVPRTVPQ PNDHEDCRVS GFAEATNFND  540
QAGRHQGFRP FSFGTTNHCQ GQIIDHAVAA SKHAEVNNSM KSRDVNLNSR LNTISFPIAT  600
ANNETSTALN DVNRSCITGK GFSGSFSNND GAASIVLPSS GLNNKISSSL GVADRSSIAA  660
RSFNAGYVYE NGASEANNIG NKNNTMVYQT SLAMRPLSPQ LTSIDAYNNN MDSIENKTSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247PRRGPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.805890.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329782610.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682430.0AK068243.1 Oryza sativa Japonica Group cDNA clone:J013149G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650335.10.0uncharacterized protein LOC4345879 isoform X1
RefseqXP_015650336.10.0uncharacterized protein LOC4345879 isoform X1
RefseqXP_015650337.10.0uncharacterized protein LOC4345879 isoform X1
TrEMBLB8BBU40.0B8BBU4_ORYSI; Uncharacterized protein
STRINGOS08T0485600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419