PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028888-PA
Common NameOsI_29691
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 508aa    MW: 55082.9 Da    PI: 7.8352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028888-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.6e-18223272255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  BGIOSGA028888-PA 223 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 272
                       889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-23220293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19221296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-15223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-16223276No hitNo description
SMARTSM003531.4E-13227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQVEK  60
RADQTPPPPP PPPPHAAVTA EKQLLHQHAL AAAGAFTINH AVAAAATAVK QEPPFAPWCQ  120
PVAAVDPRGH QWSLPFAARA VAVASSRPQQ QQQQPPPPER KGGGGFMDAG SRSSGGAGFD  180
DDDGHAARRE VSSSLKELTV RVEGKGGSCS GSAGTDQMPN TPRSKHSATE QRRRSKINDR  240
FQLLRDLLPH NDQKRDKASF LLEVIEYIRF LQEKVQKYEV SYPEWNQENA KVVPWTNIYF  300
RSSWKNAQNK GQVPADHSPD PPELLKNGSP YMFPFTGNSD NNNAVETAAA SGAQDQAETD  360
PMSRVSYRSV DTPSPNNVAD KVTSQPHAQL VRPSPAENHT VNCDKLNNSD LAIDEGTISL  420
SSQYSQELLN KLNHALENSG IDLSQASISV QINLGKRAMK RSTPAATSTS KELTDPASNS  480
QAMGRQLRLG DGAEEHRQAS KRHKSDNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.50930.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853920.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650492.10.0transcription factor BIM2 isoform X2
TrEMBLB8BC110.0B8BC11_ORYSI; Uncharacterized protein
TrEMBLQ6ZBQ20.0Q6ZBQ2_ORYSJ; BHLH protein family-like
STRINGOS08T0490000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-58BES1-interacting Myc-like protein 2