PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028898-PA
Common NameOsI_29705
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 605aa    MW: 68736.2 Da    PI: 6.0245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028898-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06520546127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+ C+++ rtG+C+ Gd C +aH++
  BGIOSGA028898-PA 520 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 546
                       79***********************97 PP
2zf-CCCH24.54.9e-08558580123
                       --S---SGGGGTS--TTTTT-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkF 23 
                       y+te+Cr+++++  C+yGd+C++
  BGIOSGA028898-PA 558 YRTEPCRYWLAGKGCWYGDKCRY 580
                       89*********99*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.91E-8519551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873519547IPR000571Zinc finger, CCCH-type
SMARTSM003560.011519546IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-11521550IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5556582IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6556580IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018557585IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094557586IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5558580IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MADMKQEEDE LAVDPGVGAV CDPVTKLRFE AIVCLLDRIP ITLQQIDMFG QDVAFRTKRI  60
GNIEALLDFL KGSAAATWGA RAGAGEPIDA SSPELHRLVE DAETAYRDVR GLQPRMVVQM  120
PRVFHKVCLP KLHQLLVIAR RLLAQNVALR RLLLQPVGCD VSPMALAEAA VSSDDFERHG  180
RNKVVIDEFG YEDLLRRRHT GHESQNDADD AEQHGREVRE GEYEDLILMR HRDTSHELLQ  240
DDARRRRADA EAEQQGGDGE VRDEYEDYLC RQLGAVYSGP DQIYEHDMRG PEPAHSPNTP  300
DQIYVPCERM LPYPSNCDNA EDRIHMACLA LKNLVKDMEG IYSPRGTLWQ YLEDVISLAH  360
ALFLENTKLH RFTDQASHQD LPLQPPQGFP FQQQPQHDGY QQPGVPFQQP QQGGYYGHGQ  420
GIMFQRGGYL QDVPFQHWQW QQGGYGQGFM FPQAQHQGGY GQGFLSEQPL PGDPSFMNMQ  480
APYDGDGGVL FQKPQHYHHG HVPSEKGAIQ AKGKQKMREP KTVMCPDWCR TGHCSSGDGC  540
EYAHSQDELR VIDARPKYRT EPCRYWLAGK GCWYGDKCRY KQHRLAREPL YVDPFLTGHE  600
LRNKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.586846e-77leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO296716156e-77
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046200.0AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBankAP0047620.0AP004762.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686H11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883283.10.0putative zinc finger CCCH domain-containing protein 57 isoform X2
SwissprotA3BUD20.0C3H57_ORYSJ; Putative zinc finger CCCH domain-containing protein 57
TrEMBLA2YWI90.0A2YWI9_ORYSI; Uncharacterized protein
STRINGOS08T0491700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2025277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-13C3H family protein