PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA029051-PA

Common Name

OsI_30018

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

SBP

Protein Properties

Length: 415aa MW: 42075.7 Da PI: 6.6713

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA029051-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	49.4	1.2e-15	124	154	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+efDe+krsCr+rL++hn+rrrk+q+ BGIOSGA029051-PA 124 RFHLLQEFDEAKRSCRKRLDGHNRRRRKPQP 154 9***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.238	84	152	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.53E-12	124	157	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	9.3E-5	124	139	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-7	124	151	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLQLGG 60 LGEFGGGGAQ PRVAVAGELA QGKGPAAAAT GAAAAASSAP AKRPRGKGLC SPTTSSPFTP 120 LFLRFHLLQE FDEAKRSCRK RLDGHNRRRR KPQPDPMNSA SYLASQQGAR FSPFATPRPE 180 ASWTGMIKTE ESPYYTHHQI PLGISSRQQH FVGSTSDGGR RFPFLQEGEI SFGNGAGAGG 240 VPMDQAAAAA AASVCQPLLK TVAPPPPPHG GGGSGGGKMF SDGGLTQVLD SDCALSLLSA 300 PANSTAIDVG GGRVVVQPTE HIPIAQPLIS GLQFGGGGGS SAWFAARPHH QAATGAAATA 360 VVVSTAGFSC PVVESEQLNT VLSSNDNEMN YNGMFHVGGE GSSDGTSSSL PFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLQLGG  60
LGEFGGGGAQ PRVAVAGELA QGKGPAAAAT GAAAAASSAP AKRPRGKGLC SPTTSSPFTP  120
LFLRFHLLQE FDEAKRSCRK RLDGHNRRRR KPQPDPMNSA SYLASQQGAR FSPFATPRPE  180
ASWTGMIKTE ESPYYTHHQI PLGISSRQQH FVGSTSDGGR RFPFLQEGEI SFGNGAGAGG  240
VPMDQAAAAA AASVCQPLLK TVAPPPPPHG GGGSGGGKMF SDGGLTQVLD SDCALSLLSA  300
PANSTAIDVG GGRVVVQPTE HIPIAQPLIS GLQFGGGGGS SAWFAARPHH QAATGAAATA  360
VVVSTAGFSC PVVESEQLNT VLSSNDNEMN YNGMFHVGGE GSSDGTSSSL PFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	151	KRSCRKRLDGHNRRRRKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.56157	0.0	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32994678	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109469	0.0	AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649377.1	0.0	squamosa promoter-binding-like protein 16
Swissprot	Q6YZE8	0.0	SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBL	B8B934	0.0	B8B934_ORYSI; Uncharacterized protein
STRING	ONIVA08G24550.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1755	37	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-15	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice. Theor. Appl. Genet., 2011. 122(8): p. 1489-96 [PMID:21327937] Wang S, et al. Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet., 2012. 44(8): p. 950-4 [PMID:22729225] Wang S, et al. The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat. Genet., 2015. 47(8): p. 949-54 [PMID:26147620] Wang Y, et al. A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.). Planta, 2016. 243(2): p. 459-71 [PMID:26474992] Lee CM, et al. Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters. Rice (N Y), 2015. 8(1): p. 33 [PMID:26519289] Bessho-Uehara K, et al. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74 [PMID:27466405]