PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029063-PA
Common NameOsI_30041
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 232aa    MW: 24690.2 Da    PI: 10.4116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029063-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.86.7e-30191551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 
                       lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r  ++ +g+r++ +++ g Wk a g+dk+
  BGIOSGA029063-PA  19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGNKYFFAVRPPAA-RGRRQHVTASGGCWKpAGGRDKP 107
                       79****************************.8899998***********43..456789****999875.68898889999****66678*** PP

               NAM  92 vlsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                       v+++   +++lvg+kk +vf          + a  +    Wvmhey+l
  BGIOSGA029063-PA 108 VVVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155
                       99988988999**********8854433222333333667******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-4014179IPR003441NAC domain
PROSITE profilePS5100540.01419179IPR003441NAC domain
PfamPF023658.0E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGNKYFFAVR PPAARGRRQH VTASGGCWKP AGGRDKPVVV ARCGGSHLVG  120
VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLALPMH KKGCLAEAEE WVVCRIFQRS  180
SSGSRSPRRP DNDVRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-291918517171NO APICAL MERISTEM PROTEIN
1ut4_B4e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_A4e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_B4e-291918517171NO APICAL MERISTEM PROTEIN
3swm_A5e-291918520174NAC domain-containing protein 19
3swm_B5e-291918520174NAC domain-containing protein 19
3swm_C5e-291918520174NAC domain-containing protein 19
3swm_D5e-291918520174NAC domain-containing protein 19
3swp_A5e-291918520174NAC domain-containing protein 19
3swp_B5e-291918520174NAC domain-containing protein 19
3swp_C5e-291918520174NAC domain-containing protein 19
3swp_D5e-291918520174NAC domain-containing protein 19
4dul_A4e-291918517171NAC domain-containing protein 19
4dul_B4e-291918517171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.383511e-118callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166314831e-118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615430.0AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
GenBankAK0687760.0AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK1047660.0AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankEU8469970.0EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-167NAC domain-containing protein 18
TrEMBLB8B9441e-167B8B944_ORYSI; Uncharacterized protein
STRINGOS08T0535800-021e-167(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-30NAC domain containing protein 83