PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA029206-PA

Common Name

OsI_30300

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ERF

Protein Properties

Length: 303aa MW: 32991.2 Da PI: 8.2999

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA029206-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.5	4.5e-20	187	239	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd ++ r++lg+f+taeeAa+a+++a+ +++g+ BGIOSGA029206-PA 187 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 239 69******.7*****3...2236************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103473	1.23E-22	16	159	IPR020846	Major facilitator superfamily domain
CDD	cd06174	2.06E-14	30	159	IPR020846	Major facilitator superfamily domain
Pfam	PF00083	2.4E-11	31	156	IPR005828	Major facilitator, sugar transporter-like
Gene3D	G3DSA:1.20.1250.20	1.0E-10	70	159	No hit	No description
CDD	cd00018	5.37E-19	187	247	No hit	No description
Pfam	PF00847	1.0E-15	187	239	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.972	188	246	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.7E-30	188	247	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-33	188	252	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.47E-22	188	247	IPR016177	DNA-binding domain
PRINTS	PR00367	1.2E-9	189	200	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-9	212	228	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055085	Biological Process	transmembrane transport
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0022857	Molecular Function	transmembrane transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGGGGGEQQQ LEVLHALDVA KTQWYHFTAI VVAGMGFFTD AYDLFCISLV TKLLGRIYYR 60 VDGSPSPGTL PPHVSASVNG VAFVGTLSGQ LFFGWLGDKL GRKRVYGITL MLMVLCSLAS 120 ALSFGHTPTS VMATLCFFRF WLGFGIGGDY PLSATIMSDG RNRSIDIMDG DGGGGWDDQG 180 NGGGETTKYR GVRRRPSGKF AAEIRDSSRQ SVRVWLGTFD TAEEAARAYD RAAYAMRGHL 240 AVLNFPAEAR NYVRGSGSSS SSRQHQQRQV IELECLDDQV LQEMLKGGDD QYRSASGSKR 300 NNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-29	183	280	9	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37989410	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaves and at low levels in roots. Expressed in leaf xylem parenchyma cells. {ECO:0000269\|PubMed:18980647}.

Functional Description ? help Back to Top
Source	Description
UniProt	High-affinity transporter for external inorganic phosphate (Pi). Probably involved in Pi uptake, translocation and internal transport throughout the plant. {ECO:0000269\|PubMed:18980647}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: In roots and leaves by phosphate starvation. Down-regulated in roots when colonized by the mycorrhizal fungus G. intraradices. Down-regulated by high phosphate in suspension cell culture. {ECO:0000269\|PubMed:12271140, ECO:0000269\|PubMed:18563580, ECO:0000269\|PubMed:18980647}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF536966	0.0	AF536966.1 Oryza sativa (japonica cultivar-group) putative phosphate transporter OsPT6 gene, complete cds.
GenBank	AK119787	0.0	AK119787.1 Oryza sativa Japonica Group cDNA clone:002-174-D01, full insert sequence.
GenBank	AP004587	0.0	AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBank	AP004623	0.0	AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649112.1	1e-104	inorganic phosphate transporter 1-6
Swissprot	Q8H6H0	1e-105	PHT16_ORYSJ; Inorganic phosphate transporter 1-6
TrEMBL	A2YY74	0.0	A2YY74_ORYSI; Uncharacterized protein
STRING	OGLUM08G25370.1	1e-104	(Oryza glumipatula)
STRING	OMERI08G18580.1	1e-104	(Oryza meridionalis)
STRING	ONIVA09G01300.1	1e-104	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP185	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	3e-22	Ethylene-responsive element binding factor 14

Publications ? help Back to Top
Paszkowski U,Kroken S,Roux C,Briggs SP Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis. Proc. Natl. Acad. Sci. U.S.A., 2002. 99(20): p. 13324-9 [PMID:12271140] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ming F, et al. Cloning and characterization of cDNA for the Oryza sativa phosphate transporter. Cell. Mol. Biol. Lett., 2005. 10(3): p. 401-11 [PMID:16217552] Ming F, et al. Cloning, expression and function of phosphate transporter encoded gene in Oryza sativa L. Sci. China, C, Life Sci., 2006. 49(5): p. 409-13 [PMID:17172047] Seo HM, et al. Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice. Biotechnol. Lett., 2008. 30(10): p. 1833-8 [PMID:18563580] Ai P, et al. Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions and kinetic properties in uptake and translocation. Plant J., 2009. 57(5): p. 798-809 [PMID:18980647] Wang C, et al. Involvement of OsSPX1 in phosphate homeostasis in rice. Plant J., 2009. 57(5): p. 895-904 [PMID:19000161] Chang C, et al. Proton pump OsA8 is linked to phosphorus uptake and translocation in rice. J. Exp. Bot., 2009. 60(2): p. 557-65 [PMID:19047499] Dai X,Wang Y,Yang A,Zhang WH OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice. Plant Physiol., 2012. 159(1): p. 169-83 [PMID:22395576] Gerhard D,Bremer M,Ritz C Estimating marginal properties of quantitative real-time PCR data using nonlinear mixed models. Biometrics, 2014. 70(1): p. 247-54 [PMID:24571556] Li Y, et al. Engineering a sensitive visual-tracking reporter system for real-time monitoring phosphorus deficiency in tobacco. Plant Biotechnol. J., 2014. 12(6): p. 674-84 [PMID:25187932] Jeong K, et al. Genetic diversity for mycorrhizal symbiosis and phosphate transporters in rice. J Integr Plant Biol, 2015. 57(11): p. 969-79 [PMID:26466747]