PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029280-PA
Common NameOsI_32370
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 173aa    MW: 18069.1 Da    PI: 9.6546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029280-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000315779123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C++ F ++  L  H++ H
  BGIOSGA029280-PA 57 FSCNYCHRKFFSSQALGGHQNAH 79
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.27E-65584No hitNo description
PROSITE profilePS5015710.995784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MTSGAILYQW RASRRKSTAA STSTCACWRP RRAGVRPTAA RGAAPAAAAA VDPREAFSCN  60
YCHRKFFSSQ ALGGHQNAHK LERTLAKRSR DIVMTAAVSP SPSSSSSSRA VHGFDGVAGG  120
FFWTAPPYGH AAAAEAAEED HDVAPPAPPP ADGGCGGGRY GRNGEEIDLS LKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1012841e-161flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO865993991e-161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611461.12e-91zinc finger protein 2
TrEMBLB8BEE21e-121B8BEE2_ORYSI; Uncharacterized protein
STRINGOGLUM09G20140.16e-91(Oryza glumipatula)
STRINGORUFI09G21000.16e-91(Oryza rufipogon)
STRINGONIVA09G20570.16e-91(Oryza nivara)
STRINGORGLA09G0156300.16e-91(Oryza glaberrima)
STRINGOBART09G19440.16e-91(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-18zinc finger protein 2