PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029415-PA
Common NameCBF3, DREB1A, ERF24, OsI_031032
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 238aa    MW: 25404.1 Da    PI: 4.8493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029415-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-184999153
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae+Aa+a++aa++++
  BGIOSGA029415-PA 49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 99
                      579******************9...6445**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1349100IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-155099IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2450117IPR001471AP2/ERF domain
PROSITE profilePS5103219.66450115IPR001471AP2/ERF domain
SMARTSM003801.5E-1350121IPR001471AP2/ERF domain
PRINTSPR003676.6E-55162IPR001471AP2/ERF domain
CDDcd000187.66E-1751117No hitNo description
PRINTSPR003676.6E-57591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MCGIKQEMSG ESSGSPCSSA SAERQHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA  60
GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGGAC CLNFADSAWL  120
LAVPRSYRTL ADVRHAVAEA VEDFFRRRLA DDALSATSSS STTPSTPRTD DEEESAATDG  180
DESSSPASDL AFELDVLSDM GWDLYYASLA QGMLMEPPSA ALGDDGDAIL ADVPLWSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.582620.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4944220.0AF494422.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF1-like protein mRNA, complete cds.
GenBankJN5611510.0JN561151.1 Oryza sativa Indica Group DREB1A (DREB1A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.11e-172dehydration-responsive element-binding protein 1A
SwissprotA2Z3891e-174DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLG9I2171e-171G9I217_ORYSI; DREB1A
TrEMBLI6TKJ01e-171I6TKJ0_ORYSA; DRE-binding factor 1A
STRINGOGLUM09G17430.11e-171(Oryza glumipatula)
STRINGORUFI09G18210.11e-171(Oryza rufipogon)
STRINGOS09T0522200-011e-171(Oryza sativa)
STRINGONIVA09G17900.11e-171(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-35C-repeat/DRE binding factor 2