PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029460-PA
Common NameOsI_31996
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 236aa    MW: 25767.9 Da    PI: 5.8168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029460-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.1e-07771181055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  BGIOSGA029460-PA  77 KVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 118
                       78******************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1465134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.62767117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-573123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-1375131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-877122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAGFSHLPQQ MEHGLITNNG FLFCHGSHGG AATTTAPAIP EDASMETSSV VLDTSPQDKK  60
RKPREEDTAS LNSAHSKVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ  120
VEFLSMRIAS LSPVLYGFGI DSDAFSDHSQ KMEGMFHEAV AIPASVLNRG SSPAQSHAIM  180
DTSNTSPTPY TLQVQGGSNN NSLSQDNGSY IMQTVGEPRQ ELFNQVVLNN YMCSFQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.880280.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329762060.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611378.11e-169transcription factor bHLH137
RefseqXP_015611379.11e-169transcription factor bHLH137
TrEMBLA2Z2Z71e-176A2Z2Z7_ORYSI; Uncharacterized protein
STRINGORUFI09G17270.21e-168(Oryza rufipogon)
STRINGOS09T0510500-011e-168(Oryza sativa)
STRINGORGLA09G0124100.11e-168(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-32bHLH family protein