PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029541-PA
Common NameOsI_31854
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SBP
Protein Properties Length: 323aa    MW: 33967.4 Da    PI: 8.2185
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029541-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP108.83.4e-3419791777
                      HHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP 17 yhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                       h rhkvC +h+k p v+v+gleqrfCqqCsrfh+l efD+ek+sCrrrLa+hnerrrk++
  BGIOSGA029541-PA 19 VHGRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 79
                      699********************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114125.461178IPR004333Transcription factor, SBP-box
PfamPF031103.1E-251877IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.3E-221865IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-311882IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MATGGSGGGG GGGGGGDDVH GRHKVCYMHA KEPIVVVAGL EQRFCQQCSR FHQLPEFDQE  60
KKSCRRRLAG HNERRRKPTP GPLSSRYGRL AASFHEEPGR SRSFVVDFSY PRVPSSVRDA  120
WPAIQPSDRM SGSIQWQGGH ELHPHRSAVA GYSDHHAFSS HGGSAAGAPM LHHPAFELTS  180
GGCLAGVATD SSCALSLLST QPWDTTQSTS SHNRSPPMSS TASAFGGGNN PVSPSVMASN  240
YMAASPGWNS SSRGHDGARN VHLPPPHGVV LNEVPPGSVH HGHFSGELEL ALQGGAPSNR  300
PEAEHGSGSG AFSHSTNAMN WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-2420772784squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.932870.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329735790.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635610.0AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610961.10.0squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0570.0SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLB8BD460.0B8BD46_ORYSI; Uncharacterized protein
TrEMBLB9G4A60.0B9G4A6_ORYSJ; Os09g0491532 protein
STRINGOS09T0491532-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-34squamosa promoter binding protein-like 9