PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA029759-PA

Common Name

OsI_31377

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 414aa MW: 40656.5 Da PI: 7.1508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA029759-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.6e-12	170	215	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq BGIOSGA029759-PA 170 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 215 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.36E-12	163	219	No hit	No description
SuperFamily	SSF47459	2.62E-16	163	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	167	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	170	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-14	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP DLAAGKAAED 60 DAEGMHHHHH HHHQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK QMTAPTIPTQ 120 SFGGGGGGGG GGTASGGGAA QPQAGAAGGG APAPPRQRVR ARRGQATDPH SIAERLRRER 180 IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKA STYTKLLIHV LSMSRLGGAA 240 AVAPLVADMS SEGRGGGAAN GGAPAAAAAA AAAGSDSLTV TEQQVAKLME EDMGTAMQYL 300 QGKGLCLMPI SLASAISSAT CHLRPPVVAA AAAQQFPAGL GAAAAAAHHH QLSAAAAAAA 360 AMRGHLPGLN ADGSVPASPS MSVLTAQSAM ANGGGGAADG EGSQLKDAAS VSKP

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP DLAAGKAAED  60
DAEGMHHHHH HHHQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK QMTAPTIPTQ  120
SFGGGGGGGG GGTASGGGAA QPQAGAAGGG APAPPRQRVR ARRGQATDPH SIAERLRRER  180
IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKA STYTKLLIHV LSMSRLGGAA  240
AVAPLVADMS SEGRGGGAAN GGAPAAAAAA AAAGSDSLTV TEQQVAKLME EDMGTAMQYL  300
QGKGLCLMPI SLASAISSAT CHLRPPVVAA AAAQQFPAGL GAAAAAAHHH QLSAAAAAAA  360
AMRGHLPGLN ADGSVPASPS MSVLTAQSAM ANGGGGAADG EGSQLKDAAS VSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.59658	0.0	leaf

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610785.1	1e-116	transcription factor UNE12 isoform X2
Swissprot	Q9ZUG9	5e-79	BH066_ARATH; Transcription factor bHLH66
TrEMBL	B8BF90	0.0	B8BF90_ORYSI; Uncharacterized protein
STRING	OMERI09G08040.2	1e-145	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-48	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]