PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA029765-PA

Common Name

OsI_31360

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

ZF-HD

Protein Properties

Length: 212aa MW: 22047.6 Da PI: 4.6074

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA029765-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.3	1.9e-33	39	94	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++Y+eClkNhAaslGgha+DGCgEfmps+ ++ +++++l+CaACgCHRnFHRr +e BGIOSGA029765-PA 39 TVYRECLKNHAASLGGHALDGCGEFMPSPAANpADPTSLRCAACGCHRNFHRRLPE 94 78***************************99******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.4E-28	39	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-24	41	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.0E-31	41	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.752	41	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEAMDVKYKP LVFPNGAIKK AAKPAAVAPA VGGGGGGETV YRECLKNHAA SLGGHALDGC 60 GEFMPSPAAN PADPTSLRCA ACGCHRNFHR RLPEGSPPPP PPPALLPAPP MPPHRGEETP 120 EVRLPGVDGD ESDSDSDGSE YDDERSVSPP PPPLAAAVAH QAYYPSAPHM LLSLGSSGQA 180 QRLPPQEEEV VIDGMEYEEG DAFCRAGWGL AS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.100827	1e-152	panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32979524	1e-152

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610599.1	1e-128	zinc-finger homeodomain protein 9
Swissprot	Q6ER21	1e-129	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	A2Z183	1e-149	A2Z183_ORYSI; Uncharacterized protein
STRING	ONIVA09G09830.1	1e-128	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	2e-28	zinc finger homeodomain 1