PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029853-PA
Common NameHOX25, OsI_030143
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 260aa    MW: 27903.7 Da    PI: 4.5348
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029853-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-192376456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  BGIOSGA029853-PA 23 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 76
                      4579*************98**********************************9 PP
2HD-ZIP_I/II122.61.9e-3922112291
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++
  BGIOSGA029853-PA  22 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQV 112
                       8*****************9999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.5561778IPR001356Homeobox domain
SuperFamilySSF466891.35E-171880IPR009057Homeodomain-like
SMARTSM003891.8E-162082IPR001356Homeobox domain
CDDcd000861.18E-162279No hitNo description
PfamPF000461.4E-162376IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-192777IPR009057Homeodomain-like
PRINTSPR000312.5E-64958IPR000047Helix-turn-helix motif
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PRINTSPR000312.5E-65874IPR000047Helix-turn-helix motif
PfamPF021831.5E-1178120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEDLVDELYG VDEQGSSSAA ARKRRLTAEQ VRALERSFEE EKRKLEPERK SELARRLGIA  60
PRQVAVWFQN RRARWKTKQL ELDFDRLRAA HDELLAGRAA LAADNESLRS QVILLTEKLQ  120
ANGKSPSPSP APAEQTAVPA APESAKSFQL EEGRCLYDAA GSTTTTNGGG GGVAMPAARV  180
AAARAASNDS PESYFAGARS PPSSSEDDCG GAGSDDDYPS SSVLLPVDAT LVGDAFEHAV  240
AATVAADEEA PLNSWEWFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17078RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.528060.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610704.10.0homeobox-leucine zipper protein HOX25
SwissprotA2Z0Q00.0HOX25_ORYSI; Homeobox-leucine zipper protein HOX25
TrEMBLC7J6K30.0C7J6K3_ORYSJ; Os09g0379600 protein
STRINGORUFI09G09080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-30homeobox 1
Publications ? help Back to Top
  1. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]