PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030038-PA
Common NameOsI_30784
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 262aa    MW: 30128.9 Da    PI: 6.7886
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030038-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.75.2e-2511100190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+  Y+ ++GF+vr+++++ksk++g it++++vCs+eg+r+ +k++ ++++r+ aetr+gCka+++++ ++  g + v++l+leHnHel+
  BGIOSGA030038-PA  11 EFWTYYGGRTGFDVRINYENKSKDDGVITSARYVCSNEGYRAIDKRD-HNTKRPCAETRIGCKAQIRITIDReVGDYSVYDLVLEHNHELQ 100
                       69******************************************999.999******************99989***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-2011100IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKFKSTKEAW EFWTYYGGRT GFDVRINYEN KSKDDGVITS ARYVCSNEGY RAIDKRDHNT  60
KRPCAETRIG CKAQIRITID REVGDYSVYD LVLEHNHELQ LPSTCHLMPS QRKISSLRAF  120
EIETMDDSGI GPKAAHELAS QQVGGSVNLG YTHRDLKNHL RTKRQRELMY GEAGSMLKYF  180
QDKVAENTSF HYALQLDCEE QITNIFWADA KMIIDYAQFG DVVTFGTTFG TNKEYRPFGV  240
FVGFNHFRET VIFGAALLYD ET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314647.11e-133protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8BE170.0B8BE17_ORYSI; Uncharacterized protein
STRINGTraes_2AS_BB6B8AC48.21e-153(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-48FAR1-related sequence 5