PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030369-PA
Common NameOsI_30561
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 411aa    MW: 46649.6 Da    PI: 6.3535
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030369-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.76.7e-12143209267
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklk 67 
                        Yn+YAk vGFs+++++s+ks ++ge  k  fvC+k g +e++ ++   k+r+++++ +  Ck +lk
  BGIOSGA030369-PA 143 HYNRYAKCVGFSIKINTSRKSAKDGERDKVMFVCNKCGPKEKTGEAcPPKKRKRSKTRQAACKFSLK 209
                       6*****************************************9999444555555566678887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-9143208IPR004330FAR1 DNA binding domain
PfamPF105511.9E-21325403IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEIPTINLDD TFDFETMYTA DDAGSLRAHN VANDEMQVFA TNDQMQVFEA NDEMQVFATN  60
DQMQVFEAND EMQVFEEMSD HADTMHTSVA TGATTATANT ISSEDSGTDD SEAQSSPSQD  120
FLCSTQVPYL TLTFNSEEEA RAHYNRYAKC VGFSIKINTS RKSAKDGERD KVMFVCNKCG  180
PKEKTGEACP PKKRKRSKTR QAACKFSLKK FLRSHRAIPK KEKDFITMLH GVNLSAGRIM  240
QLMSKLYGGA RNVPYTRKDI SNFKSKLGSE YRCRDMPQTI AHFEEIKKDD PNFFYKIQLN  300
KEDRVQNIFW VDGAARNAYK DYKDCISFDC TYMTNMYNMP CAPFIGINRH RQSIQLGCGF  360
LRNEKTETFV WLFQAFLEAM EGVEPTNIIT GQDLAMKAAI ARHPCHGGSE V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.11e-94protein FAR1-RELATED SEQUENCE 5
TrEMBLB8BDE50.0B8BDE5_ORYSI; Uncharacterized protein
STRINGOPUNC09G00260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP559546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-47FAR1-related sequence 5