PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030474-PA
Common NameOsI_30789
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 281aa    MW: 30663.8 Da    PI: 6.7273
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030474-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.7e-341670155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  BGIOSGA030474-PA 16 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 70
                      58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7111373IPR017930Myb domain
SuperFamilySSF466894.48E-181570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-321571IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-261771IPR006447Myb domain, plants
PfamPF002493.7E-91869IPR001005SANT/Myb domain
PfamPF143795.8E-23103148IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGPDNGANNN SNLAARQRLR WTNELHERFV EAVTQLGGPD RATPKGVLRI MGVQGLTIYH  60
VKSHLQKYRL AKYIPDSSAD GNKAENKDPG DLLAGLEGSS GLQISEALKL QMEVQKRLHE  120
QLEVQRQLQL RIEAQGKYLK KIIEEQQRLG GVKSETPAAG ASVTLPSDQF PDSERTDPST  180
PAPTSESPTQ GVPSNRDNGG QNEATKSPQR DDSLSRHEPL TPDSNCQPGS PTASPKHERA  240
AKRQRGNGAE FSETDFALPH SIFESSSGSE FQQCSMSYSG H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-241673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.147190.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329884500.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032410.0AK103241.1 Oryza sativa Japonica Group cDNA clone:J033123H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611984.10.0myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-105PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLB8BEA40.0B8BEA4_ORYSI; Uncharacterized protein
TrEMBLB9G2Q70.0B9G2Q7_ORYSJ; Uncharacterized protein
STRINGORUFI09G05110.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-84G2-like family protein