PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030709-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 585aa    MW: 60720.9 Da    PI: 8.1471
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030709-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.71.7e-151812092755
           G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  BGIOSGA030709-PA 181 ATPKSVLELMDVKDLTLAHVKSHLQMYRT 209
                       9***************************7 PP
2G2-like101.36.3e-32378431255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  BGIOSGA030709-PA 378 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 431
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-14169210IPR009057Homeodomain-like
SuperFamilySSF466892.51E-5178210IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-11180209IPR006447Myb domain, plants
SuperFamilySSF466893.58E-15375432IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28376432IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23378431IPR006447Myb domain, plants
PfamPF002491.2E-6379430IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAMVRELELM TSWSNSMGRH RYPTRILVDS FGHKCSASDK GVWTSCSIRA PLQGRGSFRR  60
GANIRFGRYE TTLHGGALGV TLVCAYQATK QSFLFFSKNS KNLLLHLLHH DSFHRMSSIS  120
GVSIEITVAA AEVEKEVFDR SVDGGELGGD ATGPVAAHQL AEQRGGGDVG GRAWRRRGGG  180
ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KSTDKPAASS GPADGGSGDE EFAGGGQAAS  240
GGGDSMCLRG GGGGGVAAAA FAEHGRSASE GAASSVGGGG GGDMDQSSAG NTSTTRWSNS  300
SRTKAHHNFG MLDDVXXXXX XXXXXXXXXX XXPAPPPPAS SAARTTTTTT STGGQPFVGA  360
LASRFMPKLP AKRSMRAPRM RWTSTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA  420
HVKSHLQMYR TVKSTDKPAA SSGPADGGSG DEEFAGGGQA ASGGGDSMCL RGGGGGGVAA  480
AAFAEHGRSA SEGAASSVGG GGGGDMDQSS AGNTSTTRWS NSSRDPWLSS NSCNMDAHRS  540
VGLSSPIENL EPCRSSSSQV SNHELSSPSL EFTLGRPDWH GADHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16379433357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16379433357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16379433357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16379433357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.55970.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154790060.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2687480.0FJ268748.1 Oryza sativa Japonica Group rolled leaf 9 (RL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610960.11e-135probable transcription factor RL9
SwissprotQ0J2351e-135ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A0E0M0W11e-137A0A0E0M0W1_ORYPU; Uncharacterized protein
STRINGOPUNC09G07830.11e-137(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.16e-42G2-like family protein