PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030752-PA
Common NameMIF3, OsI_31359
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ZF-HD
Protein Properties Length: 113aa    MW: 11860.1 Da    PI: 7.7081
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030752-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.51.8e-291987160
       ZF-HD_dimer  1 kekvrYkeClkNhAaslGghavDGCgEfmpsegee.gt........aaalkCaACgCHRnFHRreveee 60
                      +++vrY eC++NhAas+GghavDGC+Ef+++e+   g+        aaalkCaACgCHR+FHRr +++e
  BGIOSGA030752-PA 19 CCGVRYGECRRNHAASTGGHAVDGCREFIAAEDGGgGNstgavgvaAAALKCAACGCHRSFHRRVQVYE 87
                      5789***************************888855599*****99*****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-30190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-262284IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-192382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.8862483IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MMKRLVVLRR REPAVRFSCC GVRYGECRRN HAASTGGHAV DGCREFIAAE DGGGGNSTGA  60
VGVAAAALKC AACGCHRSFH RRVQVYEVAW DDDCDSGDTS SSSPSSSSSL SSE
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8305760.0CT830576.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611485.12e-74mini zinc finger protein 2
SwissprotA2Z1822e-77MIF3_ORYSI; Mini zinc finger protein 3
TrEMBLA0A0E0IJI57e-74A0A0E0IJI5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QRE07e-74A0A0E0QRE0_ORYRU; Uncharacterized protein
STRINGORUFI09G10930.11e-74(Oryza rufipogon)
STRINGONIVA09G09820.11e-74(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.15e-11mini zinc finger 2