PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030816-PA
Common NameOsI_31492
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 399aa    MW: 42962.1 Da    PI: 4.564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030816-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19138187255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  BGIOSGA030816-PA 138 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 187
                       69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-22138196IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-32138196IPR001471AP2/ERF domain
SMARTSM003801.2E-36138201IPR001471AP2/ERF domain
PROSITE profilePS5103223.933138195IPR001471AP2/ERF domain
CDDcd000182.69E-32138196No hitNo description
PRINTSPR003672.7E-11139150IPR001471AP2/ERF domain
PfamPF008476.7E-12139187IPR001471AP2/ERF domain
PRINTSPR003672.7E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAAAAAA AAAAAAKKQQ GRRVTADVLW PGMLRKGKAA AAEEDFEADF  60
REFERGMSDD EAEGGGGEEE EEEEDDVVVE VPPPATARFV VRAAAKAAPP TADGMLTTKL  120
VQHDGPTARS AKRKRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT AEEAARAYDA  180
EARKIRGKKA KVNFPDEPAV AQKLSLKQNA AKQEKLAPPL KSCGDDAFFQ LNSSDNDLFA  240
MLAKVPAKPA EPVDLMPPVK PLASTETFEM NMLSDTSSNS FGSSDFGWED DTLTPDYTSV  300
FVPNAAMPAY GEPAYLTGGA PKRMRNNYGI AVPQGNGMPN LAQNMPTFDP EMKYLPLPYV  360
ESSSDESMDN LLQNDATQDG ASNEGIWSLD ELLMAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20138195260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-20138195563ATERF1
3gcc_A9e-20138195563ATERF1
5wx9_A3e-191381971474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.261780.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172260850.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8313920.0AY831392.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLA2Z1K60.0A2Z1K6_ORYSI; Uncharacterized protein
STRINGOMERI09G08700.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-27related to AP2 12