PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030901-PA
Common NameOsI_31643
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 98aa    MW: 10387.8 Da    PI: 8.5243
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030901-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind773.2e-243190261
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
      HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61
                      Fl+k+++++e+++++e+isw ++g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+Y+
  BGIOSGA030901-PA 31 FLTKTHQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYD 90
                      9**********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-262690IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.35E-222790IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-192798IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-133154IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-203190IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-136981IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-138294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MAAAEAAAAV GKQQQKGGGG RGGGGGGPAP FLTKTHQMVE ESATDEVISW GKEGRSFVVW  60
KPVEFARDLL PLHFKHCNFS SFVRQLNTYD ALNGVLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-172489165HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-172489165HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11826GGRGGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.271761e-146callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329863911e-146
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-148CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611859.18e-58heat stress transcription factor B-1
SwissprotQ67TP97e-59HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA2Z2096e-66A2Z209_ORYSI; Uncharacterized protein
STRINGOMERI09G09960.12e-58(Oryza meridionalis)
STRINGONIVA03G20760.12e-58(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-28HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]