PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA030928-PA
Common NameOsI_31681
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 215aa    MW: 22842.7 Da    PI: 5.9308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA030928-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-142976254
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      rr+h+e+Er+RR+riN  +++Lr l+P+a      + +Ka+ L ++v+Y+++L
  BGIOSGA030928-PA 29 RRSHSEAERKRRERINAHLDTLRGLVPSA-----SRIDKAALLGEVVRYVRKL 76
                      99**************************9.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.1E-152779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-142780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6472776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-122779No hitNo description
PfamPF000101.0E-112976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-113382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.6E-4121189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVAARSGDDA ELGLDVECLA AAPRWTRARR SHSEAERKRR ERINAHLDTL RGLVPSASRI  60
DKAALLGEVV RYVRKLRSEA AGSAAVVPGE GDEVVVEEEE VEVEGCSCDA GEKQAARRVK  120
ASVCCADRPG LMSELGDAER SVSARAVRAE IATVGGRTRS VLELDVARTA AAGGGSNGAS  180
QLPALQAALR AVIMSQEELL AVESYKQRRF SADFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875916.16e-82transcription factor bHLH131
TrEMBLA2Z2471e-146A2Z247_ORYSI; Uncharacterized protein
STRINGOBART09G13210.11e-124(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-19bHLH family protein