PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031128-PA
Common NameOsI_32121
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 201aa    MW: 21484.6 Da    PI: 4.8381
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031128-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-093171444
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44
                      + +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rq 
  BGIOSGA031128-PA 31 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQL 71
                      456***********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-111471IPR009057Homeodomain-like
SuperFamilySSF466891.37E-71871IPR009057Homeodomain-like
CDDcd000864.53E-73070No hitNo description
PfamPF000462.6E-63171IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDGEEDSEWM MMDVGGKGGK GGGGGGAADR KKRFSEEQIK SLESMFATQT KLEPRQKLQL  60
ARELGLQPRQ LEKLAEMLQE PRGKYGDNAG DDARSGGVAG MKKEEFVGAG GAATLYSSAE  120
GGGTTTTTTA KLMPHFGSDD VDAGLFLRPS SQHHPPPPHA GAGFTSSEPA ADHQSFNFHS  180
SWPSSTEQTC SSTPWWEFES E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11725GGKGGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1003100.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172399830.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0597550.0AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence.
GenBankAK1031600.0AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence.
GenBankAP0056810.0AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8308470.0CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612316.11e-111homeobox-leucine zipper protein HOX6
SwissprotQ651Z51e-112HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH351e-112HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A0E0B5L61e-144A0A0E0B5L6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QU551e-144A0A0E0QU55_ORYRU; Uncharacterized protein
TrEMBLB8BDS81e-144B8BDS8_ORYSI; Uncharacterized protein
TrEMBLB9G4P21e-144B9G4P2_ORYSJ; Uncharacterized protein
STRINGOGLUM09G17780.11e-145(Oryza glumipatula)
STRINGORUFI09G18560.11e-145(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-15homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]