PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031362-PA
Common NameOsI_34735
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 509aa    MW: 58500.2 Da    PI: 6.7931
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031362-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.58.3e-2212100290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       f+++Y+ + GF+vrk++++k+k +g+i + ++vC +eg+r+e+k++ + ++ ++aetrt+C+ ++ v ++  +g+++v++l+leHnH l+
  BGIOSGA031362-PA  12 FWKSYGGQKGFEVRKRYTNKRKSDGKIRSCRYVCANEGHRKEDKRD-HLTKCPTAETRTDCQVRMGVVLDLeKGNYKVADLVLEHNHILQ 100
                       9******************************************999.999****************999988***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-171299IPR004330FAR1 DNA binding domain
PfamPF105512.7E-25222316IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEFSSTDEAW MFWKSYGGQK GFEVRKRYTN KRKSDGKIRS CRYVCANEGH RKEDKRDHLT  60
KCPTAETRTD CQVRMGVVLD LEKGNYKVAD LVLEHNHILQ LPETSHLMVS QRKISELQGF  120
EIETADDAGI GPKAAHELAS IQVGGSLNLR YTLRDHKNYL RGKRQREMAY GQAGSMLMYF  180
QDKIAENPSF QYALQMDQEE QIANIFWVDA KMLTDYAYFG DVVSFDTTFG TNKESRLFGV  240
FVGFNQFRET VVFGAVLMYD ETYESFKWLF ETFLKAHNGK QPKTIYTDQD FAMGKAVKEV  300
FSEVWHGLCT FHIMQNAAKH LAEVDNKEES NTSPEQIAED NEKEPSILVD FSACMFEYED  360
EETFEQAFNT IRAKASKQSW LDSIYRVKEK WAECYMKDVF ALACLKKKEV QTKSSKRKRN  420
WLDKMHKSTE KGSKKGGKKK EKGSKEQGTV KKGGEKKEKE ATVQDSAAVQ NIYPNTSLPM  480
EELSEPYMAI NTFSQILTGP ITDDVLADF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876513.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA2ZAG10.0A2ZAG1_ORYSI; Uncharacterized protein
STRINGSb10g022742.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-64FAR1-related sequence 5