PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031396-PA
Common NameOsI_34657
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 168aa    MW: 18489.9 Da    PI: 6.3524
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031396-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-163175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +WT+eE+++++++ +qlG+g+W+ I++ + + Rt+ q+ s+ qky
  BGIOSGA031396-PA 31 PWTEEEHKKFLEGLRQLGKGDWRGISKNFVTSRTATQVASHAQKY 75
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2492480IPR017930Myb domain
SMARTSM007173.9E-112878IPR001005SANT/Myb domain
SuperFamilySSF466891.65E-172880IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-182979IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.7E-123074IPR009057Homeodomain-like
PfamPF002493.4E-133175IPR001005SANT/Myb domain
CDDcd001672.88E-113176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEITVQDWEI PGRKLSIGQQ HIDNNPQAGV PWTEEEHKKF LEGLRQLGKG DWRGISKNFV  60
TSRTATQVAS HAQKYFLRQT NPGKKKRRAS LFDVVAECSD DQLPSPQSVG TKPPTQDIIH  120
TDRGDVPADD DMSLSMISGL EMASSSISSL ELSIAPPHCA IEAAIKVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1008101e-168callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567656011e-168
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212351e-166AK121235.1 Oryza sativa Japonica Group cDNA clone:J023093N04, full insert sequence.
GenBankAK2889861e-166AK288986.1 Oryza sativa Japonica Group cDNA, clone: J090086G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612867.17e-83transcription factor MYBS2
SwissprotB8BI936e-84MYBS2_ORYSI; Transcription factor MYBS2
SwissprotQ7XC516e-84MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBLB8BI941e-121B8BI94_ORYSI; Uncharacterized protein
STRINGOGLUM10G18690.13e-82(Oryza glumipatula)
STRINGORUFI10G19790.13e-82(Oryza rufipogon)
STRINGOS10T0562100-013e-82(Oryza sativa)
STRINGORGLA10G0137400.12e-82(Oryza glaberrima)
STRINGOBART10G18600.12e-82(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-33MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]