PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031406-PA
Common NameOsI_34640
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 273aa    MW: 27854.6 Da    PI: 4.3939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031406-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.33.8e-08951281955
               AP2  19 IrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       Ir+p+   k+ r++lg+f ta++Aa+a++ a+++++g
  BGIOSGA031406-PA  95 IREPR---KKSRIWLGTFPTADMAARAHDVAALAIKG 128
                       45542...369**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PROSITE profilePS5103215.56773136IPR001471AP2/ERF domain
SMARTSM003802.4E-1485142IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1295137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-1995137IPR001471AP2/ERF domain
CDDcd000183.42E-1995138No hitNo description
PfamPF008476.7E-599128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAMAKELQET SSSSSSSAAS TSSCSSAVTD AWSSPARPNA VAGGKRKKEV VGEADEAAGG  60
GAGEEEQEEA EAAAAGKSSA ATKKRKRSSD RKHPIREPRK KSRIWLGTFP TADMAARAHD  120
VAALAIKGRA AHLNFPDLAG VLPRAASASP KDVQAAAALA AAFTTSPSSS PSSSSSADDV  180
SPCVVHADAD EQPAAAAKND DDDGSTTAPV AAAAAAAAAD EQQLFDLPDL LFDIQDGPFG  240
FPAMWAPLAD VDEVNAELRL EEPLLWDLGV TDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.818390.0panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614793.11e-124ethylene-responsive transcription factor ERF038
TrEMBLB8BI850.0B8BI85_ORYSI; Uncharacterized protein
STRINGONIVA10G21000.11e-121(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.18e-17ERF family protein