PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031446-PA
Common NameOsI_34582
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 805aa    MW: 82978.4 Da    PI: 6.6419
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031446-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.15.7e-13296383290
              GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                       ve+L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps++++++++ +l a+k+fsevsP 
  BGIOSGA031446-PA 296 VEQLAEAAKLAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGDAPAPSASTPYDVVVKLGAYKAFSEVSPP 383
                       789*************************999555566******************99....999999***********************95 PP
2GRAS302.31.1e-924438042374
              GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                       ve+L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps++++++++ +l a+k+fsevsP+l
  BGIOSGA031446-PA 443 VEQLAEAAKLAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGDAPAPSASTPYDVVVKLGAYKAFSEVSPVL 531
                       789*************************999555566******************99....999999************************** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       +f+hlt+ qa+l+++ g+ ++H++Dfdi++G QW++L+q+La+  ++++ l++T+++sp+s++  el+ ++e+L+ fA+elgv f+f+v+   
  BGIOSGA031446-PA 532 QFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQ-LRPAAALKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVF--- 620
                       ******************************************7.46788****************************************9... PP

              GRAS 185 rledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                       ++++l++ eL ++ + g+a+aV+l +   +          ++++vL+lvk+l +kvvv v++ +d+++ +F+++++++++  ++l++s++a  
  BGIOSGA031446-PA 621 NIDTLDPAELlAIATaGDAVAVHLPVGPAHAA--------ATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESIDAV- 704
                       7777777665366668**********999997........5678*********************************************998. PP

              GRAS 276 preseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                       +++ ++++k+Er l++++i+++v +++++ + +++     Wr+++ +aGF pv+ +++a++qa++ll+kv+++g+rve++ gsl+l+W++ +L
  BGIOSGA031446-PA 705 GTDPDTASKIERYLIHPAIEQCVVARHRAaSAMDKAPPPPWRAAFAAAGFAPVQATTFAESQAESLLSKVHVRGFRVEKRAGSLCLYWQRGEL 797
                       7888*****************98888776589999999******************************************************* PP

              GRAS 368 vsvSaWr 374
                       vsvSaWr
  BGIOSGA031446-PA 798 VSVSAWR 804
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.0E-10296383IPR005202Transcription factor GRAS
PROSITE profilePS5098539.943416784IPR005202Transcription factor GRAS
PfamPF035144.0E-90443804IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MPFGGSAREG HAGTLLQHHL IHGVGLAAAG KLVSSSSAAA AAAGAGGFWE PRSVLDHRHS  60
PSPSPPTSAS TLSSPLADVA ALAGANAKNV SVSPPPPGWG TGGGGGGGEE VVAAKEEWVH  120
QLTPLDMGLG AGEGWDAAGN VLSDAAAAAT SGMAPDNTFL RWIIGGGEDA SAAMAGVMDP  180
PVLELDHGGG VGAAPAAFGP FAPPPAMEDT KPVVPFAAGH PPPNFLLQHH HHHPQPHAAF  240
FGAHHPSFDA APPPSKRHHP MAAAPAPKLP PFPAGGFVPA LKPKAEAAND EAAAAVEQLA  300
EAAKLAEAGD AFGAREILAR LNYRLPAAPT AGTPLLRSAF YFKEALRLAL SPTGDAPAPS  360
ASTPYDVVVK LGAYKAFSEV SPPHAAFFGA HHPSFDAAPP PSKRHHPMAA APAPKLPPFP  420
AGGFVPALKP KAEAANDEAA AAVEQLAEAA KLAEAGDAFG AREILARLNY RLPAAPTAGT  480
PLLRSAFYFK EALRLALSPT GDAPAPSAST PYDVVVKLGA YKAFSEVSPV LQFAHLTCVQ  540
AVLDELGGAG CIHVLDFDIG MGEQWASLMQ ELAQLRPAAA LKVTALVSPA SHHPLELQLI  600
HENLSGFAAE LGVFFHFTVF NIDTLDPAEL LAIATAGDAV AVHLPVGPAH AAATPAVLRL  660
VKRLGAKVVV SVDRGCDRSD LPFAAHLFHS FHSAVYLLES IDAVGTDPDT ASKIERYLIH  720
PAIEQCVVAR HRAASAMDKA PPPPWRAAFA AAGFAPVQAT TFAESQAESL LSKVHVRGFR  780
VEKRAGSLCL YWQRGELVSV SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-2547480432375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.468780.0callus| panicle| root| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329914480.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLB8BI590.0B8BI59_ORYSI; Uncharacterized protein
STRINGONIVA10G20420.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-80GRAS family protein