PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031479-PA
Common NameOsI_34508
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 333aa    MW: 36553.1 Da    PI: 8.5004
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031479-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-312679255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  BGIOSGA031479-PA 26 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 79
                      8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-302281IPR009057Homeodomain-like
PROSITE profilePS5129412.8942282IPR017930Myb domain
SuperFamilySSF466891.97E-152480IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-242679IPR006447Myb domain, plants
PfamPF002496.1E-102778IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAMVRGTMVR RERIEGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQHK ATPKRVLQLM  60
GVGGLTISHV KSHLQMYRNM RNDDLGIQQM DDQEQTFAGG MQIWTDMQLQ DHHHECNGPY  120
CRCHSSSKHA KGSLLLLHHH QQQQQLQRPN EMETRRAEAS TQTGFLRSQG ICERDVSSGL  180
PVPAAYYSYY TPMAHGAPPA AADGAGHDDP PRLLGLVVMA TTTRRGSREE HKATPPPENG  240
AIRHGRKARR TTAAAEEEER DGDGDELSLS LTLDSGLSCR SSGGAGAYCC SEGSSSNWLI  300
SSPSSTTSLV AGGCSRRSTP AMLSSVVSLD LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-172781357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-172781357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-172781357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-172781357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126181e-177CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876555.10.0uncharacterized protein LOC112936623 isoform X2
TrEMBLB8BI250.0B8BI25_ORYSI; Uncharacterized protein
STRINGORGLA10G0122800.10.0(Oryza glaberrima)
STRINGOBART10G17270.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-29G2-like family protein