PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA031580-PA

Common Name

OsI_34264

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

YABBY

Protein Properties

Length: 103aa MW: 11282.8 Da PI: 10.7304

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA031580-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	76	1.2e-23	22	57	135	170
YABBY 135 eeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eiqrika+nPdishreafsaaaknWahfP+ihfgl BGIOSGA031580-PA 22 DEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 57 69********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-21	22	57	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MRRRRGGSTT ARAKRLEEND GDEIQRIKAG NPDISHREAF SAAAKNWAHF PHIHFGLMPD 60 HRGLKKTSLL PQDHQRKDGL LKEGLYAAAA AAAAAANMGV APY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.58966	1e-135	flower\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	124271031	1e-135

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269\|PubMed:17216490}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274015	1e-132	AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613818.1	3e-53	protein YABBY 3 isoform X1
Refseq	XP_025876472.1	1e-53	protein YABBY 3 isoform X2
Swissprot	Q8L556	2e-54	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	B8BHT1	3e-69	B8BHT1_ORYSI; Uncharacterized protein
STRING	OPUNC10G13730.1	9e-53	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	9e-31	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]