PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031769-PA
Common NameOsI_33900
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 532aa    MW: 57471.1 Da    PI: 7.6469
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031769-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.8e-1969102134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++Cgtt+Tp+WR+gp+g++tLCnaC ++yr+ +
  BGIOSGA031769-PA  69 CRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGK 102
                       *******************************976 PP
2GATA46.55e-15241274134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++CgttkTp WR gpd  ++LC aCG +yr+  
  BGIOSGA031769-PA 241 CAHCGTTKTPAWRLGPDSRRKLCDACGNKYRSGQ 274
                       *******************************976 PP
3GATA47.62.2e-15459493135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++CgttkTp W +gpd   +LCnaCG  yrk +l
  BGIOSGA031769-PA 459 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 493
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.14E-1461124No hitNo description
SMARTSM004011.4E-1663117IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7566399IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.8E-1467101IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.51E-1468117No hitNo description
PfamPF003202.4E-1669102IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-10234275No hitNo description
PROSITE profilePS5011412.044235271IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-6235292IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-11235290IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.20E-8240272No hitNo description
PfamPF003202.6E-13241274IPR000679Zinc finger, GATA-type
SMARTSM004010.15391437IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.814391410IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-4396410IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.76E-11452514No hitNo description
SMARTSM004011.6E-7453503IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.093453489IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-10457491IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.17E-10458506No hitNo description
PfamPF003201.7E-13459493IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVVVDGLHDG GGGDLQALLD DAGVDDVAAR GGGGGGGEVE EEVERPSNED AFPAVEKMAT  60
AAAAKGLQCR HCGTTETPQW RHGPEGHRTL CNACSMRYRS GKLVPEYRPL RSPTFSPELH  120
SNRHHRVLQL RRRPGPQSAA PSPAAVARCG GEAKEEEEEL AWVSNKDAFA TVETTMAPSP  180
RVVETPPEHD HRPANIPTTS PEPHSDRPRR VVQLPRRLQE PSASANLAHA VAATARAGRE  240
CAHCGTTKTP AWRLGPDSRR KLCDACGNKY RSGQLNSTTF SQNSQEQKKK SKSSACSRER  300
KRSAVAATVV VGGGLRDDAA AIADEHLDGG DLQALLDDVA LDDVAARGGG DAGEAKEEEE  360
ELEWLSNKDA FPTVETMSPA PPENRTKAPV PPAGWQCRHC GSTETPLWRE RDGPAEAEHV  420
RKEETPPNIT PATKHRRIVD LLRCSTALNT AATAVERRCT HCGTTKTPAW LSGPDSRGKL  480
CNACGKQYRK GRLVPEYRPL NCPTFSLELH SNAHAHRRRR ESPVAIAIAG EK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613898.10.0GATA-type transcription factor sreA
TrEMBLA2Z8630.0A2Z863_ORYSI; Uncharacterized protein
STRINGONIVA10G11610.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-24GATA transcription factor 1