PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031986-PA
Common NameOsI_33453
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 172aa    MW: 19416.5 Da    PI: 10.5988
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031986-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.69.7e-23351642127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                        +Gf F P+d e +   ++k v+gk   +l++v+k+++i+++  P+++   +++ e+  +yfFskr+ +++  +++r+ r+++ g+Wka+g +
  BGIOSGA031986-PA  35 LVGFYFVPKDLEFLAILMCKLVRGKVpGTLNNVFKHIRILNAtPPSSMT-YIETmEDGYIYFFSKRQFATKarNKRRPIRVADGGTWKASGGS 126
                       68*********************99944445669999876651677886.5555144577****998654433788999999*********** PP

               NAM  90 kevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                       k+v    g +v  k t+vfy    + +++++kt+W mhe++
  BGIOSGA031986-PA 127 KKVG---GIDVNQKFTMVFYerrFEGDRNPVKTNWGMHEFT 164
                       **95...599**********43313466778********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-2628170IPR003441NAC domain
PROSITE profilePS5100525.35834172IPR003441NAC domain
PfamPF023651.9E-1236164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGTAAAAVEA NSNDGKWKGK EKVVPEYGKN QHGMLVGFYF VPKDLEFLAI LMCKLVRGKV  60
PGTLNNVFKH IRILNATPPS SMTYIETMED GYIYFFSKRQ FATKARNKRR PIRVADGGTW  120
KASGGSKKVG GIDVNQKFTM VFYERRFEGD RNPVKTNWGM HEFTKIIPGT KN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984201e-138flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126181e-151CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.12e-82NAC transcription factor NAM-B2 isoform X1
TrEMBLA2Z6Y31e-125A2Z6Y3_ORYSI; Uncharacterized protein
STRINGOBART10G08900.15e-92(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.15e-11NAC domain containing protein 94