PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA031988-PA
Common NameOsI_33451
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 175aa    MW: 19966.9 Da    PI: 10.4938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA031988-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.69.3e-27361721127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgk 88 
                       +p+G  F P+d el     +k v+g+    l++v+++++i++++P  L+ + + +ee+  +yfFskr+ +++  +++r+ r+tk g+Wka+g 
  BGIOSGA031988-PA  36 MPVGWYFVPKDLELFAILRCKLVRGQLpGALNNVFEHIRILEIHPALLHeTYIGNEEDgYIYFFSKRQFTTKagNKRRPMRVTKGGTWKASGG 128
                       699************7766666666653334566999***********8445555555356****998655533788999************* PP

               NAM  89 dkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                       +k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  BGIOSGA031988-PA 129 SKTVRSKkvGGIDVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 172
                       *****99888899**********43312456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3229172IPR003441NAC domain
PROSITE profilePS5100530.30936175IPR003441NAC domain
PfamPF023651.5E-1437172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAEQPPEGRG GGGNNNGKWK GKEKMVPEYG KNRHGMPVGW YFVPKDLELF AILRCKLVRG  60
QLPGALNNVF EHIRILEIHP ALLHETYIGN EEDGYIYFFS KRQFTTKAGN KRRPMRVTKG  120
GTWKASGGSK TVRSKKVGGI DVGQKLTMVF YERRFEGDRN PIKTNWGMHE FTNDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126181e-152CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613639.11e-103NAC transcription factor NAM-B2
TrEMBLA2Z6Y11e-126A2Z6Y1_ORYSI; Uncharacterized protein
STRINGOGLUM10G08700.11e-109(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-12NAC family protein