PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032091-PA
Common NameOsI_33180
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 177aa    MW: 19550.1 Da    PI: 7.0456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032091-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-085396348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  BGIOSGA032091-PA 53 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 96
                      79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.71E-94798IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-84895IPR009057Homeodomain-like
SMARTSM007174.1E-45098IPR001005SANT/Myb domain
PfamPF002494.7E-65395IPR001005SANT/Myb domain
CDDcd001672.52E-55395No hitNo description
PROSITE profilePS500907.3065396IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDAGGGRAAA APRQGERLPP LEPGRQEHAT PLREVVPRQV APPPRPRDVY HRPFTARDDD  60
ELLRLHYRLG DRWKEIGRAV YGRTSRVMKH RWRELRRCGF LAAAARKEQA ALDMADDTVE  120
TSEVEEPADQ SLPSLELQRS TLADTLASSF GSCSLATDHV MDPLAGSLAL GFACLAV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976103250.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.15e-62transcription factor MYB73
TrEMBLB8BGD41e-124B8BGD4_ORYSI; Uncharacterized protein
STRINGORUFI10G07430.11e-102(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-09myb domain protein r1