PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032231-PA
Common NameOsI_32887
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 486aa    MW: 54224.5 Da    PI: 4.3841
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032231-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.39.7e-30341652128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkya.tgkrknra.....tksgyWkatg 87 
                        pG +F P+deelv++yL+ k+e+++ ++ ++i+evdi++++P +L +k+k+ +e++wyfF+ r+ +++ +++++nr+     +++g W+atg
  BGIOSGA032231-PA  34 SPGNHFVPSDEELVDFYLRGKIEQRRPPM-DFINEVDIMSFDPVKLIEKYKGyGENRWYFFTVRKPSKTkKKDEPNRKvvvdgVEEGSWSATG 125
                       79************************999.99**************8555554888*****9988766615779999656666679******* PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +   ++ k +++++g+k++L++   +a+++e+ +W mhey +
  BGIOSGA032231-PA 126 SVAYICGKdHETVIGTKRVLTYK--SARSAEEDKWSMHEYVM 165
                       ******99667779********9..5666669********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-3525182IPR003441NAC domain
PROSITE profilePS5100535.27833182IPR003441NAC domain
PfamPF023653.5E-1735164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTAESNGGNS SAAATTASNG GRRRHELVPK LRLSPGNHFV PSDEELVDFY LRGKIEQRRP  60
PMDFINEVDI MSFDPVKLIE KYKGYGENRW YFFTVRKPSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVAYI CGKDHETVIG TKRVLTYKSA RSAEEDKWSM HEYVMLDKSQ MDQYVLCAIQ  180
LKQTYEAEKK AQEEEERGVK RKRTATRKRR KGDIDQTTSQ EQEDQQQETP PPGDPHDQSV  240
VDAPYYSTQM ALGGEEEVAP VPWCADCMAQ PDRIEYPAVW YNQQEQQPSQ LVDRSMMTQG  300
YIGDLSYIQN QFDQQQAHDH GSINAFDEAL DQCHDTNFAW DNAGIYPGNN LLDGNLDDDT  360
QDQFGNQATL GALTGELEYG TGYQFHDALQ ATPGSDDASA QSMGIQPAAG HSMGDDDETC  420
CNDDLSSLLA DISRILLDGN GVINNEGNPE GSNQGLHICK DGHQWPLEES TMPTVECVLQ  480
HPGESA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-16201832169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BFY40.0B8BFY4_ORYSI; Uncharacterized protein
STRINGOGLUM10G03910.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-21NAC-like, activated by AP3/PI