PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA032409-PA

Common Name

HOX15, OsI_031417

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 248aa MW: 27249.7 Da PI: 8.057

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA032409-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	93	147	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k BGIOSGA032409-PA 93 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 147 788899***********************************************98 PP
2	HD-ZIP_I/II	125.8	2e-40	93	181	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr + BGIOSGA032409-PA 93 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 181 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.3E-18	80	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	89	149	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-17	91	152	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-15	91	153	IPR001356	Homeobox domain
CDD	cd00086	4.33E-15	93	150	No hit	No description
Pfam	PF00046	2.4E-15	93	147	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.5E-10	149	182	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	7.0E-21	149	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAQDDEDVGL ALGLSLGSGG HRRQRESRDE APSSAAASLL TLRLPAESGG QPQVVVKREV 60 VRAEEEEYEY EYERALYSSS AAAADDDEGC NSRKKLRLSK EQSALLEDRF KEHSTLNPKQ 120 KVALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCELLKR CCETLTEENR RLHRELQQLR 180 ALTHSTAAGF FMATTLPVPA ATLSICPSCE RLATAAAAAG ASPTAAADRT NKPTAPHLFS 240 PFAKSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	97	SRKKLRL
2	141	149	RRARTKLKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069324	0.0	AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence.
GenBank	AC099400	0.0	AC099400.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0096E22, complete sequence.
GenBank	AC145127	0.0	AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612921.1	1e-142	homeobox-leucine zipper protein HOX15
Swissprot	A2Z4C4	0.0	HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
TrEMBL	A0A0E0B722	1e-179	A0A0E0B722_9ORYZ; Uncharacterized protein
STRING	OGLUM10G00200.1	1e-180	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-59	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Agalou A, et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol., 2008. 66(1-2): p. 87-103 [PMID:17999151]